Python Module Index

p


	p
	`PanACoTA`
	`PanACoTA.align_module.alignment`
	`PanACoTA.align_module.get_seqs`
	`PanACoTA.align_module.pan_to_pergenome`
	`PanACoTA.align_module.post_align`
	`PanACoTA.annotate_module`
	`PanACoTA.annotate_module.annotation_functions`
	`PanACoTA.annotate_module.format_prodigal`
	`PanACoTA.annotate_module.format_prokka`
	`PanACoTA.annotate_module.general_format_functions`
	`PanACoTA.annotate_module.genome_seq_functions`
	`PanACoTA.corepers_module`
	`PanACoTA.corepers_module.persistent_functions`
	`PanACoTA.pangenome_module`
	`PanACoTA.pangenome_module.mmseqs_functions`
	`PanACoTA.pangenome_module.post_treatment`
	`PanACoTA.pangenome_module.protein_seq_functions`
	`PanACoTA.prepare_module`
	`PanACoTA.prepare_module.download_genomes_func`
	`PanACoTA.prepare_module.filter_genomes`
	`PanACoTA.subcommands`
	`PanACoTA.subcommands.align`
	`PanACoTA.subcommands.all_modules`
	`PanACoTA.subcommands.annotate`
	`PanACoTA.subcommands.corepers`
	`PanACoTA.subcommands.pangenome`
	`PanACoTA.subcommands.prepare`
	`PanACoTA.subcommands.tree`
	`PanACoTA.tree_module`
	`PanACoTA.tree_module.fastme_func`
	`PanACoTA.tree_module.fasttree_func`
	`PanACoTA.tree_module.quicktree_func`
	`PanACoTA.utils`
	`PanACoTA.utils_pangenome`