Coverage for PanACoTA/align_module/__init__.py: 100%

1# ############################################################################### 

2# This file is part of PanACOTA. # 

3# # 

4# Authors: Amandine Perrin # 

5# Copyright © 2018-2020 Institut Pasteur (Paris). # 

6# See the COPYRIGHT file for details. # 

7# # 

8# PanACOTA is a software providing tools for large scale bacterial comparative # 

9# genomics. From a set of complete and/or draft genomes, you can: # 

10# - Do a quality control of your strains, to eliminate poor quality # 

11# genomes, which would not give any information for the comparative study # 

12# - Uniformly annotate all genomes # 

13# - Do a Pan-genome # 

14# - Do a Core or Persistent genome # 

15# - Align all Core/Persistent families # 

16# - Infer a phylogenetic tree from the Core/Persistent families # 

17# # 

18# PanACOTA is free software: you can redistribute it and/or modify it under the # 

19# terms of the Affero GNU General Public License as published by the Free # 

20# Software Foundation, either version 3 of the License, or (at your option) # 

21# any later version. # 

22# # 

23# PanACOTA is distributed in the hope that it will be useful, but WITHOUT ANY # 

24# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # 

25# FOR A PARTICULAR PURPOSE. See the Affero GNU General Public License # 

26# for more details. # 

27# # 

28# You should have received a copy of the Affero GNU General Public License # 

29# along with PanACOTA (COPYING file). # 

30# If not, see <https://www.gnu.org/licenses/>. # 

31# ############################################################################### 

32 

33""" 

34PanACoTA align submodule 

35"""